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Key strategies for optimizing Environmental Monitoring Programs

This webinar featured an engaging discussion among industry experts, including contributions from my esteemed colleagues Gilberto Dallas, Abby Roth and Alexandra Bezilla. Each speaker brought unique perspectives and expertise to the table, offering key insights through different facets of Environmental Monitoring from sterile compounding to sterile drug manufacturing. 

Environmental Monitoring (EM) is a cornerstone of maintaining sterility and compliance in pharmaceutical manufacturing. During the webinar, we delved into critical strategies for preparing your EM program for regulatory inspections, deciding when to perform microbial identifications (MIDs) beyond action and alert excursions and many more! Below is a summary of the three main takeaways from my contribution:

You can watch the webinar in the following link

Key Takeaway 1: How should companies prepare to discuss their EM Programs with inspectors?

Preparing for inspections involves a comprehensive understanding of your EM program and readiness to showcase its robustness. Companies should ensure their trend reports are updated, accessible, and prepared to share with inspectors. It is crucial to explain these reports, align them with your Standard Operating Procedures (SOPs), and be familiar with the details of trends, including how issues were identified and resolved. Personnel should be trained to speak confidently about the EM program and its end-to-end workflow, from preparing in the lab to sampling on the floor and back to lab for processing. It is likely that an inspector may even want to see EM sampling while they are on site, best to prepare for that. Conducting mock inspections can help simulate potential scenarios and questions, enabling companies to showcase consistency and a deep understanding of both routine operations and unexpected challenges.

In addition to trend report and program overviews, be ready to discuss the qualification process for media and equipment used in the EM program. Highlight the EM isolates program and emphasize how it can provide insights into the types of organisms present within your cleanroom environment. Discuss how this program supports trend analysis and helps identify recurring contamination sources, enabling proactive remediation strategies. Lastly, be prepared to speak on any technological advancements or software supporting the EM workflows at your facility. This includes tools that streamline data collection, automate trend analysis, and integrate microbial identification results into a centralized system for better traceability. Highlighting these advancements can demonstrate a commitment to innovation and continuous improvement in the EM process. 

Key Takeaway 2: How companies should decide which EM samples to obtain Microbial Identification (MID) for beyond action & alert excursions

Understanding microbes present at both the quantitative and qualitative levels is invaluable for building a comprehensive contamination control strategy. When determining whether to perform microbial identifications beyond mandatory action and alert levels, companies must balance regulatory requirements, risk management, and data-driven insights. Perform microbial identifications for all action-level excursions as required, especially in Grade A and Grade B environments where stricter standards apply. Some interpret the EU Annex 1 as to require all organisms to species level for Grade B as well. For alert-level excursions in the Grades B, C, and D areas, it is necessary to implement a risk-based policy for when you will perform microbial identifications, and to what degree. For Grade C and D especially, it can be challenging to identify down to the species level and I do not think this is necessary in most cases a genus level identification is acceptable. For isolated events, a gram stain may even suffice, but adverse trends typically warrant species-level MIDs.

When a sample or set of samples does not exceed the alert or action criteria, a company should also develop a risk-based approach for identifying representative of microbial flora in Grade C and D areas. Consider identifying organisms with unusual morphologies or those very frequently recovered but not quite meeting alert or action criteria. Performing additional MIDs after major events, such as facility construction or new equipment installation, can help identify potential shifts in the microbial profile. Establishing routine quarterly or monthly identification schedules ensures trends are effectively tracked too, which can be helpful come investigation time (you would be so surprised).

Lastly, don’t forget to Include sampling from critical personnel, particularly gloves and sleeves, to monitor potential contamination sources from their aseptic techniques and behaviors. Use microbial data to build a microbial profile of your facility. Analyze trends to understand contamination patterns and optimize cleaning and operational practices.

Key Takeaway 3: How companies should structure their position on mold recoveries In the cleanroom environments

Addressing mold recoveries in the cleanroom requires a structured and proactive approach to ensure compliance and maintain cleanroom integrity. Appropriate incubation schemes are important in detecting mold, be sure to have data that supports the current time and temperature scheme you have for mold. Companies could utilize dual-temperature incubation strategies to optimize the recovery of both bacterial and fungal contaminants, but some studies have shown a single temperature at ~28c could also work fine (per Gilberto Dalmaso). The best media for recovering mold can include Sabouraud Dextrose Agar (SDA), Potato Dextrose Agar, and Columbia Blood Agar, all of which can be effective in supporting the growth of a wide range of fungi and mold.

Establishing limits for mold in cleanroom environments, particularly in Grades C and D, should be a priority if mold is frequently recovered during routine monitoring. While no mold should be routinely recovered in Grades A and B, companies should define acceptable limits for Grades C and D based on risk assessments and historical data. Regular environmental monitoring and a comprehensive understanding of the facility’s microbial profile are essential for setting these thresholds. This data should also come from your microbial identification policy too.

An overall strategy for managing mold recovery in cleanrooms should include routine monitoring, periodic trending of data, and prompt investigations into any mold recoveries. This involves identifying sources of contamination, such as HVAC systems, personnel, or materials, and implementing corrective and preventive actions as soon as possible. Mold should not be allowed to make its way into the critical aseptic processing areas, classified as Grades A and B. Training personnel to recognize and prevent mold contamination, as well as optimizing cleaning and disinfection procedures, are critical elements of this strategy. Utilizing data-driven insights and adopting a risk-based approach will ensure the program remains effective and compliant and feeds into the overall site contamination control strategy.

Ultimate goals for EM Programs

To maintain a compliant EM program, companies must understand their facility’s microbial flora throughout the facility and apply a logical approach to monitoring. Establishing clear criteria for microbial identifications and analyzing data for contamination trends are essential steps for establishing facility control. Mold management is equally critical, requiring optimized incubation schemes, effective fungal recovery media, and risk-based limits for Grades C and D. Implementing a well-structured mold strategy prevents fungal contamination from transferring into critical areas while also supporting the broader contamination control program.

Meaningful preparation, strategic sampling, establishing a robust microbial identification policy and managing mold recovery will enable companies to effectively manage their EM programs, ensuring regulatory compliance and a deeper understanding of cleanroom environments. Special thanks again to our host SherpaPharma for affording this important platform to discuss key topics in the EM space.

Don’t miss the insights from Abby Roth and Gilberto Dalmaso shared during this webinar.

Vanessa Figueroa leverages her combined knowledge of the Pharmaceutical, Biotechnology and Medical Decives industries to provide manufacturers across the US, Europe and India with critical laboratory operations management and personnel training programs to ensure compliance with cGMPs as well as global regulatory standards.

Combining hands-on Quality Control, Sterility, Inspection, and Compliant Operations with an educational leadership approach and natural business acumen, Vanessa brings 17+ years of real-time experience to deliver transformational real-world results.


Vanessa Figueroa leverages her combined knowledge of the Pharmaceutical, Biotechnology and Medical Decives industries to provide manufacturers across the US, Europe and India with critical laboratory operations management and personnel training programs to ensure compliance with cGMPs as well as global regulatory standards.

Combining hands-on Quality Control, Sterility, Inspection, and Compliant Operations with an educational leadership approach and natural business acumen, Vanessa brings 17+ years of real-time experience to deliver transformational real-world results.

Vanessa Figueroa leverages her combined knowledge of the Pharmaceutical, Biotechnology and Medical Decives industries to provide manufacturers across the US, Europe and India with critical laboratory operations management and personnel training programs to ensure compliance with cGMPs as well as global regulatory standards.

Combining hands-on Quality Control, Sterility, Inspection, and Compliant Operations with an educational leadership approach and natural business acumen, Vanessa brings 17+ years of real-time experience to deliver transformational real-world results.

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